Survival-associated eQTLs across different cancer types
We identified 22,212 eQTLs associated with patient overall survival across different cancer types at FDR < 0.05.
|
Cancer type
|
SNP ID
|
SNP position (hg19)
|
Alleles (A/a)
|
log-rank test p-value
|
Sample size
|
Median survival time AA
|
Median survival time Aa
|
Median survival time aa
|
|
|---|---|---|---|---|---|---|---|---|---|
| HNSC | rs176159 | chr22:24514352 | A/G | 3.4E-6 | 412 | 8.63 | 14.67 | 16.4 | KM Plot |
| HNSC | rs176161 | chr22:24516291 | C/T | 2.12E-6 | 411 | 16.33 | 17.07 | 8.63 | KM Plot |
| HNSC | rs1770775 | chr1:213025055 | A/T | 1.08E-5 | 409 | 16.07 | 18.67 | 5.03 | KM Plot |
| HNSC | rs1774509 | chr16:70901176 | C/T | 3.2E-7 | 412 | 16.92 | 15.73 | 7.17 | KM Plot |
| HNSC | rs1869303 | chr15:40804574 | C/G | 1.59E-8 | 412 | 4.62 | 18.6 | 16.23 | KM Plot |
| HNSC | rs1972409 | chr10:6181367 | T/C | 1.3E-5 | 402 | 20.2 | 13.17 | 15.22 | KM Plot |
| HNSC | rs1983890 | chr10:6178614 | A/G | 1.29E-6 | 412 | 15.4 | 13.23 | 20.12 | KM Plot |
| HNSC | rs1985047 | chr22:24580381 | G/C | 3.79E-5 | 411 | 16.43 | 14.85 | 10.02 | KM Plot |
| HNSC | rs1990250 | chr4:110770124 | A/C | 3.2E-5 | 412 | 13.1 | 17.78 | 16.17 | KM Plot |
| HNSC | rs199594955 | chr7:76218115 | A/T | 1.11E-10 | 410 | 16.37 | 14.77 | 3.95 | KM Plot |
| HNSC | rs199943319 | chr20:33871098 | AAT/A | 3.46E-5 | 411 | 16.25 | 17.25 | 4.2 | KM Plot |
| HNSC | rs2001106 | chr22:24535229 | A/G | 4.13E-5 | 412 | 16.4 | 14.85 | 10.02 | KM Plot |
| HNSC | rs200138085 | chr20:44460278 | GGAA/G | 4.41E-7 | 408 | 16.37 | 14.98 | 9.13 | KM Plot |
| HNSC | rs200382520 | chr1:161721403 | T/TG | 5.89E-5 | 407 | 16.17 | 16.43 | 4.3 | KM Plot |
| HNSC | rs200642919 | chr7:76218146 | C/G | 1.11E-10 | 410 | 16.37 | 14.77 | 3.95 | KM Plot |